SMTL ID : 4ehc.1

Crystal structure of the C-terminal domain of Rv0977 of Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.7, H.9, D.59, G.61, D.212, G.214 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.7, A:H.9, A:D.59, A:D.212, A:D.212

31 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: P.143, N.144, N.145, T.150, S.151, Y.285 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: L.48, N.49, G.51, Q.74, N.75 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: S.120, S.121, G.124, T.125 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: I.192, S.193, T.194, I.290 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: G.64, L.65, S.114, N.116, I.153 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: H.5, H.6, H.8, G.267 Ligands: EDO.28 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: F.71, L.72, Q.74, F.76, Y.98 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: N.179, T.186, Y.282 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: P.33, A.171, G.172 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: Y.242, Q.247, T.248, L.249 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: Q.35, F.45, P.55, S.133, G.134 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: S.11, E.41, R.132, I.216 Ligands: EDO.27 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: S.229, G.230, F.262, S.265 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain A: S.12, G.13, F.232 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain A: G.134, V.136 Ligand excluded by PLIP EDO.17: 9 residues within 4Å: Chain A: L.166, N.179, L.181, G.183, G.184, I.185, T.186, P.280, Y.282 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain A: I.80, S.99, P.112, T.113, S.114 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain A: G.86, Y.87, G.89, L.91, T.92 Ligands: EDO.28 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain A: T.40, R.132, N.217, T.258, N.259, H.273 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain A: N.29, A.30, T.31 Ligands: EDO.22 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain A: A.30, T.31, V.32, G.105, N.106 Ligands: EDO.21 Ligand excluded by PLIP EDO.23: 6 residues within 4Å: Chain A: F.232, V.233, P.234, A.235, A.257, T.260 Ligand excluded by PLIP EDO.24: 5 residues within 4Å: Chain A: H.8, H.9, H.10, A.88, G.89 Ligand excluded by PLIP EDO.25: 6 residues within 4Å: Chain A: G.184, I.185, L.249, L.250, Q.279, T.294 Ligand excluded by PLIP EDO.26: 9 residues within 4Å: Chain A: L.227, P.228, S.229, G.230, G.231, F.232, P.234, V.263 Ligands: EDO.31 Ligand excluded by PLIP EDO.27: 6 residues within 4Å: Chain A: H.9, L.57, Y.87, F.129, L.130 Ligands: EDO.13 Ligand excluded by PLIP EDO.28: 7 residues within 4Å: Chain A: S.4, H.5, H.7, H.8, G.89 Ligands: EDO.7, EDO.19 Ligand excluded by PLIP EDO.29: 4 residues within 4Å: Chain A: F.147, P.148, G.149, T.150 Ligand excluded by PLIP EDO.30: 5 residues within 4Å: Chain A: V.37, N.38, S.131, R.132, G.134 Ligand excluded by PLIP EDO.31: 5 residues within 4Å: Chain A: P.228, S.229, G.230, G.231 Ligands: EDO.26 Ligand excluded by PLIP EDO.32: 4 residues within 4Å: Chain A: P.33, F.45, M.53, F.104 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barathy, D.V. et al., Crystal structure of a putative aspartic proteinase domain of the Mycobacterium tuberculosis cell surface antigen PE_PGRS16. FEBS Open Bio (2013)

Release Date

2013-06-19

Peptides

PE-PGRS FAMILY PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PE-PGRS FAMILY PROTEIN