SMTL ID : 4ehs.1

Crystal structure of Helicobacter pylori DnaG Primase C terminal domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 4 residues within 4Å: Chain A: V.52, C.71 Chain B: E.124, I.127 No protein-ligand interaction detected (PLIP) BME.2: 6 residues within 4Å: Chain A: I.127, C.128, K.131, E.149 Chain B: V.52 Ligands: BME.3 No protein-ligand interaction detected (PLIP) BME.3: 7 residues within 4Å: Chain A: E.124, I.127 Chain B: L.48, V.52, F.67, C.71 Ligands: BME.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.124 BME.4: 2 residues within 4Å: Chain B: Q.111, C.128 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abdul Rehman, S.A. et al., Crystal structure and mode of helicase binding of the C-terminal domain of primase from Helicobacter pylori. J.Bacteriol. (2013)

Release Date

2013-05-01

Peptides

DNA primase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA primase