SMTL ID : 4ehv.1

Human p38 MAP kinase in complex with NP-F10 and RL87

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x 0SJ: (1R,5S)-3-(4-chlorobenzoyl)-1,2,3,4,5,6-hexahydro-8H-1,5-methanopyrido[1,2-a][1,5]diazocin-8-one(Non-covalent)

0SJ.1: 7 residues within 4Å: Chain A: Y.35, R.67, R.70, E.71, L.74, H.148, D.168 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.35, A:R.67, A:L.74, A:D.168 Hydrogen bonds: A:R.70 Water bridges: A:R.149, A:R.149 0SJ.2: 6 residues within 4Å: Chain A: R.149, R.189, I.193, W.197, Y.200, V.204 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.149, A:I.193, A:W.197, A:V.204 Hydrogen bonds: A:R.149 pi-Stacking: A:Y.200 0SJ.4: 9 residues within 4Å: Chain A: M.194, L.195, N.196, W.197, S.252, S.254, A.255, Y.258 Ligands: IRG.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.195, A:W.197, A:A.255 Hydrogen bonds: A:S.252 pi-Stacking: A:W.197, A:W.197

1 x IRG: N~4~-cyclopropyl-2-phenylquinazoline-4,7-diamine(Covalent)

IRG.3: 15 residues within 4Å: Chain A: P.191, E.192, L.195, N.196, H.199, L.246, K.249, I.250, S.251, S.252, A.255, L.291, D.292, D.294 Ligands: 0SJ.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.195, A:L.195, A:N.196, A:H.199, A:L.246, A:K.249, A:I.250, A:A.255, A:L.291 Hydrogen bonds: A:N.196, A:N.196, A:D.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Over, B. et al., Natural-product-derived fragments for fragment-based ligand discovery. Nat Chem (2012)

Release Date

2012-12-05

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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