SMTL ID : 4ejx.1

Structure of ceruloplasmin-myeloperoxidase complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.69 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.1: 4 residues within 4Å: Chain C: R.202, N.205, S.207, V.208 No protein-ligand interaction detected (PLIP)

7 x CU: COPPER (II) ION(Non-covalent)

CU.2: 6 residues within 4Å: Chain A: V.294, H.295, C.338, N.340, H.343, L.348 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.295, A:C.338, A:H.343 CU.3: 4 residues within 4Å: Chain A: H.182, H.999, L.1037, H.1039 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.182, A:H.999, A:H.1039 CU.4: 3 residues within 4Å: Chain A: H.122, H.180, H.1041 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.122, A:H.180, A:H.1041 CU.5: 4 residues within 4Å: Chain A: H.120, H.122, H.997, H.999 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.120, A:H.997 CU.6: 5 residues within 4Å: Chain A: H.656, C.699, T.701, H.704, M.709 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.656, A:C.699, A:H.704 CU.7: 4 residues within 4Å: Chain A: H.994, C.1040, H.1045, M.1050 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.994, A:C.1040 CU.8: 4 residues within 4Å: Chain A: E.291, E.954, H.959, D.1044 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.959

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 2 residues within 4Å: Chain A: N.138, Q.970 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.138 NAG.10: 1 residues within 4Å: Chain A: N.397 No protein-ligand interaction detected (PLIP) NAG.12: 7 residues within 4Å: Chain A: N.529 Chain C: N.77, N.80, L.84, A.86, V.87, Q.89 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.80, C:V.87, C:Q.89, C:Q.89 NAG.13: 4 residues within 4Å: Chain C: N.113, A.116, W.257, L.261 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.113

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.11: 24 residues within 4Å: Chain B: M.89, G.92, Q.93, D.96, D.100, F.101, T.102 Chain C: R.127, E.130, M.131, Y.184, T.217, F.220, R.221, Y.222, G.223, H.224, I.227, F.253, L.294, F.295, L.305, L.308, R.312 21 PLIP interactions: 15 interactions with chain C, 6 interactions with chain B, Hydrophobic interactions: C:E.130, C:M.131, C:R.221, C:Y.222, C:F.253, C:L.294, C:L.294, C:F.295, C:F.295, C:L.305, C:L.305, B:Q.93, B:Q.93, B:D.96 Salt bridges: C:R.127, C:R.221, C:R.312 Metal complexes: C:H.224 Hydrogen bonds: B:D.100, B:T.102, B:T.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samygina, V.R. et al., Ceruloplasmin: macromolecular assemblies with iron-containing acute phase proteins. Plos One (2013)

Release Date

2013-04-10

Peptides

Ceruloplasmin: A
Myeloperoxidase light chain: B
Myeloperoxidase heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

Ceruloplasmin

Myeloperoxidase light chain

Myeloperoxidase heavy chain

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