SMTL ID : 4ek9.1

Crystal structure of DOT1L in complex with EPZ000004

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x EP4: 5'-deoxy-5'-(dimethylamino)adenosine(Non-covalent)

EP4.1: 13 residues within 4Å: Chain A: P.142, E.143, V.144, G.146, G.172, V.194, E.195, K.196, A.197, G.230, D.231, F.232, N.250 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.146, A:K.196, A:D.231, A:F.232 pi-Stacking: A:F.232

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: S.149, F.150, D.151 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.150, A:D.151, A:D.151 Water bridges: A:Q.121 SO4.3: 2 residues within 4Å: Chain A: S.112, T.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.113, A:T.113

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: L.167, V.169, Y.192, R.240, N.243, T.244 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.240, A:R.240, A:N.243, A:T.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basavapathruni, A. et al., Conformational adaptation drives potent, selective and durable inhibition of the human protein methyltransferase DOT1L. Chem.Biol.Drug Des. (2012)

Release Date

2012-10-17

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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