SMTL ID : 4eke.1

Crystal structure of GPb in complex with DK11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x D1I: 3-(beta-D-glucopyranosyl)-6-pentylfuro[2,3-d]pyrimidin-2(3H)-one(Non-covalent)

D1I.1: 19 residues within 4Å: Chain A: G.123, G.124, L.125, N.271, D.272, F.274, F.275, H.330, H.366, T.367, A.372, V.444, N.473, Y.562, E.661, A.662, S.663, G.664, T.665 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.275, A:T.367, A:A.372 Hydrogen bonds: A:G.124, A:L.125, A:H.366, A:E.661, A:E.661, A:A.662, A:S.663, A:S.663, A:G.664 Water bridges: A:T.665 D1I.2: 19 residues within 4Å: Chain B: G.123, G.124, L.125, N.271, D.272, F.274, F.275, H.330, H.366, T.367, A.372, V.444, N.473, Y.562, E.661, A.662, S.663, G.664, T.665 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.275, B:T.367, B:A.372 Hydrogen bonds: B:G.124, B:L.125, B:H.366, B:H.366, B:Y.562, B:E.661, B:A.662, B:S.663, B:S.663, B:G.664 Water bridges: B:T.665

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kantsadi, A.L. et al., The binding of C5-alkynyl and alkylfurano[2,3-d]pyrimidine glucopyranonucleosides to glycogen phosphorylase b: Synthesis, biochemical and biological assessment. Eur.J.Med.Chem. (2012)

Release Date

2012-07-25

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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