SMTL ID : 4eki.1

Crystal Structure of DOT1L in complex with EPZ004777

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x 0QK: 7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine(Non-covalent)

0QK.1: 23 residues within 4Å: Chain A: V.144, Y.145, L.152, D.170, L.171, G.172, S.173, G.174, V.178, V.194, E.195, K.196, A.197, P.200, G.230, D.231, F.232, F.248, V.249, N.250, F.254, V.276, Y.321 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.152, A:V.178, A:K.196, A:F.232, A:F.248, A:N.250, A:F.254, A:V.276, A:Y.321 Hydrogen bonds: A:D.170, A:D.170, A:K.196, A:A.197, A:D.231, A:F.232, A:N.250 Water bridges: A:G.176, A:N.250

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.212, K.216, H.222 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.212, A:K.216, A:H.222 SO4.3: 3 residues within 4Å: Chain A: N.108, T.109, R.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.110 SO4.4: 3 residues within 4Å: Chain A: S.112, T.113, G.114 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.113, A:T.113, A:T.113, A:G.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basavapathruni, A. et al., Conformational adaptation drives potent, selective and durable inhibition of the human protein methyltransferase DOT1L. Chem.Biol.Drug Des. (2012)

Release Date

2012-10-17

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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