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SMTL ID : 4el5.1
Crystal structure of GPb in complex with DK12
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-dimer
Ligands
2 x
D1M
:
5-ethynyl-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione
(Non-covalent)
D1M.1:
16 residues within 4Å:
Chain A:
G.124
,
L.125
,
L.128
,
D.272
,
N.273
,
D.328
,
H.366
,
T.367
,
V.444
,
N.473
,
Y.562
,
E.661
,
A.662
,
S.663
,
G.664
,
T.665
18
PLIP interactions
:
18 interactions with chain A
Hydrophobic interactions:
A:L.125
,
A:H.366
,
A:T.367
Hydrogen bonds:
A:G.124
,
A:L.125
,
A:D.272
,
A:D.272
,
A:N.273
,
A:N.273
,
A:N.273
,
A:E.661
,
A:E.661
,
A:A.662
,
A:S.663
,
A:S.663
,
A:G.664
Water bridges:
A:G.126
,
A:T.665
D1M.2:
16 residues within 4Å:
Chain B:
G.124
,
L.125
,
L.128
,
D.272
,
N.273
,
D.328
,
H.366
,
T.367
,
V.444
,
N.473
,
Y.562
,
E.661
,
A.662
,
S.663
,
G.664
,
T.665
18
PLIP interactions
:
18 interactions with chain B
Hydrophobic interactions:
B:L.125
,
B:H.366
,
B:T.367
Hydrogen bonds:
B:G.124
,
B:L.125
,
B:D.272
,
B:N.273
,
B:N.273
,
B:N.273
,
B:H.366
,
B:Y.562
,
B:E.661
,
B:A.662
,
B:S.663
,
B:S.663
,
B:G.664
Water bridges:
B:G.126
,
B:T.665
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Kantsadi, A.L. et al., The binding of C5-alkynyl and alkylfurano[2,3-d]pyrimidine glucopyranonucleosides to glycogen phosphorylase b: Synthesis, biochemical and biological assessment. Eur.J.Med.Chem. (2012)
Release Date
2012-07-25
Peptides
Glycogen phosphorylase, muscle form:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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Glycogen phosphorylase, muscle form
Toggle Identical (AB)
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2gm9.1
|
4ej2.1
|
4eke.1
|
4eky.1
|
4el0.1
|
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|
4mhs.1
|
4mi3.1
|
4mi6.1
|
4mi9.1
|
4mic.1
|
4mra.1
|
5mcb.1
|
7onf.1
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