SMTL ID : 4eme.1

X-ray crystal structure and specificity of the Plasmodium falciparum malaria aminopeptidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-12-mer

Ligands

24 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.87, D.325, N.326, E.380, D.435 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.87, A:D.325, A:D.435, A:D.435 ZN.2: 5 residues within 4Å: Chain A: D.325, E.380, E.381, H.535 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.325, A:E.381, A:E.381, A:H.535 ZN.3: 5 residues within 4Å: Chain B: H.87, D.325, E.380, D.435 Ligands: ZN.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.87, B:D.325, B:D.435, B:D.435 ZN.4: 5 residues within 4Å: Chain B: D.325, E.380, E.381, H.535 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.325, B:E.381, B:E.381, B:H.535 ZN.5: 5 residues within 4Å: Chain C: H.87, D.325, E.380, D.435 Ligands: ZN.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.87, C:D.325, C:D.435, C:D.435 ZN.6: 5 residues within 4Å: Chain C: D.325, E.380, E.381, H.535 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.325, C:E.381, C:E.381, C:H.535 ZN.7: 5 residues within 4Å: Chain D: H.87, D.325, E.380, D.435 Ligands: ZN.8 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.87, D:D.325, D:D.435, D:D.435 ZN.8: 5 residues within 4Å: Chain D: D.325, E.380, E.381, H.535 Ligands: ZN.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.325, D:E.381, D:E.381, D:H.535 ZN.9: 6 residues within 4Å: Chain E: H.87, D.325, N.326, E.380, D.435 Ligands: ZN.10 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.87, E:D.325, E:D.435, E:D.435 ZN.10: 5 residues within 4Å: Chain E: D.325, E.380, E.381, H.535 Ligands: ZN.9 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.325, E:E.381, E:E.381, E:H.535 ZN.11: 5 residues within 4Å: Chain F: H.87, D.325, E.380, D.435 Ligands: ZN.12 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.87, F:D.325, F:D.435, F:D.435 ZN.12: 5 residues within 4Å: Chain F: D.325, E.380, E.381, H.535 Ligands: ZN.11 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.325, F:E.381, F:E.381, F:H.535 ZN.13: 5 residues within 4Å: Chain G: H.87, D.325, E.380, D.435 Ligands: ZN.14 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.87, G:D.325, G:D.435, G:D.435 ZN.14: 5 residues within 4Å: Chain G: D.325, E.380, E.381, H.535 Ligands: ZN.13 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.325, G:E.381, G:E.381, G:H.535 ZN.15: 5 residues within 4Å: Chain H: H.87, D.325, E.380, D.435 Ligands: ZN.16 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.87, H:D.325, H:D.435, H:D.435 ZN.16: 5 residues within 4Å: Chain H: D.325, E.380, E.381, H.535 Ligands: ZN.15 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.325, H:E.381, H:E.381, H:H.535 ZN.17: 6 residues within 4Å: Chain I: H.87, D.325, N.326, E.380, D.435 Ligands: ZN.18 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.87, I:D.325, I:D.435, I:D.435 ZN.18: 5 residues within 4Å: Chain I: D.325, E.380, E.381, H.535 Ligands: ZN.17 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:D.325, I:E.381, I:E.381, I:H.535 ZN.19: 5 residues within 4Å: Chain J: H.87, D.325, E.380, D.435 Ligands: ZN.20 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:H.87, J:D.325, J:D.435, J:D.435 ZN.20: 5 residues within 4Å: Chain J: D.325, E.380, E.381, H.535 Ligands: ZN.19 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:D.325, J:E.381, J:E.381, J:H.535 ZN.21: 5 residues within 4Å: Chain K: H.87, D.325, E.380, D.435 Ligands: ZN.22 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.87, K:D.325, K:D.435, K:D.435 ZN.22: 5 residues within 4Å: Chain K: D.325, E.380, E.381, H.535 Ligands: ZN.21 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:D.325, K:E.381, K:E.381, K:H.535 ZN.23: 5 residues within 4Å: Chain L: H.87, D.325, E.380, D.435 Ligands: ZN.24 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.87, L:D.325, L:D.435, L:D.435 ZN.24: 5 residues within 4Å: Chain L: D.325, E.380, E.381, H.535 Ligands: ZN.23 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:D.325, L:E.381, L:E.381, L:H.535

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sivaraman, K.K. et al., X-ray crystal structure and specificity of the Plasmodium falciparum malaria aminopeptidase PfM18AAP. J.Mol.Biol. (2012)

Release Date

2012-06-27

Peptides

M18 aspartyl aminopeptidase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

M18 aspartyl aminopeptidase