SMTL ID : 4emi.1

Toluene dioxygenase reductase in reduced state in complex with NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 38 residues within 4Å: Chain A: I.8, G.9, N.10, G.11, V.12, G.13, G.14, I.33, G.34, D.35, E.36, R.43, P.44, L.46, S.47, K.48, P.78, E.79, V.80, A.106, T.107, G.108, S.109, L.127, R.128, I.154, E.157, L.245, G.274, D.275, E.290, T.291, Y.292, M.293, A.295, S.319, W.320 Ligands: NAD.2 31 PLIP interactions: 31 interactions with chain A Hydrogen bonds: A:N.10, A:G.11, A:G.13, A:D.35, A:E.36, A:E.36, A:R.43, A:R.43, A:K.48, A:V.80, A:V.80, A:S.109, A:D.275, A:T.291, A:Y.292 Water bridges: A:V.12, A:V.12, A:G.14, A:E.36, A:E.79, A:T.107, A:G.108, A:S.109, A:S.109, A:R.110, A:R.128, A:R.128, A:M.293, A:A.295 Salt bridges: A:R.43, A:R.128

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 32 residues within 4Å: Chain A: S.47, K.48, R.112, M.114, R.128, V.149, G.150, G.151, G.152, L.153, I.154, G.155, E.157, L.172, E.173, A.174, G.175, L.179, V.180, R.181, T.206, G.207, C.236, V.237, G.238, A.239, E.290, S.319, W.320, T.321, M.330 Ligands: FAD.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.153, A:I.154 Hydrogen bonds: A:R.112, A:L.153, A:I.154, A:A.174, A:R.181, A:C.236, A:G.238, A:W.320, A:T.321 Water bridges: A:R.112, A:R.128, A:G.152, A:G.155, A:E.173, A:L.179, A:V.180, A:R.181, A:V.208, A:V.237, A:A.239 Salt bridges: A:R.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, T.Y. et al., Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase. J.Biol.Chem. (2012)

Release Date

2012-09-26

Peptides

TodA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TodA

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