SMTL ID : 4emn.2 (3 other biounits)

Crystal structure of RpfB catalytic domain in complex with benzamidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.17 Å

Oligo State

monomer

Ligands

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 3 residues within 4Å: Chain A: N.22, G.23, Y.24 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.24, A:Y.24 Hydrogen bonds: A:N.22 Water bridges: A:Y.24 BEN.2: 8 residues within 4Å: Chain A: E.11, Y.24, Q.29, D.31, T.34, A.70, W.71 Ligands: SO4.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.24, A:T.34, A:A.70, A:W.71 Hydrogen bonds: A:Q.29, A:A.70 pi-Stacking: A:W.71

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: E.11, W.71, P.72, V.73, C.74 Ligands: BEN.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.71, A:V.73, A:C.74 Water bridges: A:E.11, A:E.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruggiero, A. et al., Molecular determinants of inactivation of the resuscitation promoting factor B from Mycobacterium tuberculosis. J.Biomol.Struct.Dyn. (2013)

Release Date

2013-02-27

Peptides

Probable resuscitation-promoting factor rpfB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Probable resuscitation-promoting factor rpfB

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