SMTL ID : 4eno.1

Crystal structure of oxidized human nm23-H1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: K.12, Y.52, R.105, N.115, H.118 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.52, A:N.115, A:I.117, A:G.119 Salt bridges: A:K.12, A:R.105, A:H.118 PO4.2: 4 residues within 4Å: Chain B: K.12, Y.52, N.115, H.118 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.115 Water bridges: B:G.119 Salt bridges: B:K.12, B:H.118 PO4.3: 5 residues within 4Å: Chain C: K.12, Y.52, R.105, N.115, H.118 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.115, C:I.117, C:G.119 Salt bridges: C:K.12, C:R.105, C:H.118 PO4.4: 4 residues within 4Å: Chain D: K.12, Y.52, N.115, H.118 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.115 Water bridges: D:G.119 Salt bridges: D:K.12, D:H.118 PO4.5: 5 residues within 4Å: Chain E: K.12, Y.52, R.105, N.115, H.118 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:Y.52, E:N.115, E:I.117, E:G.119 Salt bridges: E:K.12, E:R.105, E:H.118 PO4.6: 4 residues within 4Å: Chain F: K.12, Y.52, N.115, H.118 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:Y.52, F:N.115 Water bridges: F:G.119 Salt bridges: F:K.12, F:H.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.S. et al., Structure of Nm23-H1 under oxidative conditions. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-03-27

Peptides

Nucleoside diphosphate kinase A: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Nucleoside diphosphate kinase A

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