SMTL ID : 4eny.1

Crystal Structure of Pim-1 kinase in complex with (2E,5Z)-2-(2-chlorophenylimino)-5-(4-hydroxy-3-methoxybenzylidene)thiazolidin-4-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain A: F.103, I.106, T.107, D.143, D.207, G.211, D.212 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.212 Salt bridges: A:D.143, A:D.207, A:D.212

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: V.99, Q.100, D.101, D.104 Ligands: J19.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.101, A:D.101, A:D.101, A:D.104

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: R.231, S.233, S.234 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.234, A:S.234 Water bridges: A:R.231, A:R.231 Salt bridges: A:R.231

1 x J19: (2Z,5Z)-2-[(2-chlorophenyl)imino]-5-(4-hydroxy-3-methoxybenzylidene)-1,3-thiazolidin-4-one(Non-covalent)

J19.4: 17 residues within 4Å: Chain A: L.17, G.18, S.19, F.22, G.23, S.24, V.25, A.38, K.40, L.93, E.94, R.95, V.99, L.147, I.158, D.159 Ligands: GOL.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.25, A:A.38, A:L.93, A:R.95, A:L.147 Hydrogen bonds: A:D.159, A:D.159, A:D.159 Water bridges: A:K.40, A:F.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, L.J. et al., Flexibility of the P-loop of Pim-1 kinase: observation of a novel conformation induced by interaction with an inhibitor. Acta Crystallogr.,Sect.F (2012)

Release Date

2012-08-08

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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