SMTL ID : 4eox.1

X-ray Structure of Polypeptide Deformylase Bound to a Acylprolinamide inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.77, C.130, H.173, H.177 Ligands: 0S5.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.130, A:H.173, A:H.177

1 x 0S5: N-benzoyl-1-[(2R)-3-cyclopentyl-2-{[formyl(hydroxy)amino]methyl}propanoyl]-L-prolinamide(Non-covalent)

0S5.2: 16 residues within 4Å: Chain A: R.68, G.69, G.70, V.71, G.72, Q.77, E.128, G.129, C.130, L.131, Y.166, V.170, H.173, E.174, H.177 Ligands: NI.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.71, A:V.71, A:E.128, A:V.170, A:H.173 Hydrogen bonds: A:G.69, A:V.71, A:Q.77, A:L.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Axten, J.M. et al., Acylprolinamides: a new class of peptide deformylase inhibitors with in vivo antibacterial activity. Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-05-30

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

Peptide deformylase

Related Entries With Identical Sequence