SMTL ID : 4eoy.1 (2 other biounits)

Plasmodium falciparum Atg8 in complex with Plasmodium falciparum Atg3 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x ASN- ASP- TRP- LEU- LEU- PRO- SER- TYR: Autophagy-related protein 3(Non-covalent)

ASN-ASP-TRP-LEU-LEU-PRO-SER-TYR.1: 13 residues within 4Å: Chain A: R.31, P.33, K.49, K.51, F.52, L.53, P.55, N.57, M.58, E.62, I.66, H.70, Y.116 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.33, A:K.49, A:K.51, A:F.52, A:L.53, A:P.55, A:I.66, A:Y.116 Hydrogen bonds: A:R.31, A:R.31, A:K.51, A:L.53 Water bridges: A:K.51 pi-Cation interactions: A:K.51

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: P.6, E.37 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:P.6, H2O.2, H2O.4, H2O.4 CA.4: 6 residues within 4Å: Chain A: S.13, F.14, E.15, N.16, R.17, V.18 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.13, A:F.14

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: K.64, Y.89, L.90 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.64 Hydrogen bonds: A:L.90 Salt bridges: A:K.64

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: I.46 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hain, A.U. et al., Structural characterization and inhibition of the Plasmodium Atg8-Atg3 interaction. J.Struct.Biol. (2012)

Release Date

2013-02-20

Peptides

Microtubule-associated protein 1 light chain 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Microtubule-associated protein 1 light chain 3

Related Entries With Identical Sequence