SMTL ID : 4eqz.1

Crystal structure of human DOT1L in complex with inhibitor FED2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x AW0: 5'-deoxy-5'-[(3-{[(4-methylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]adenosine(Non-covalent)

AW0.1: 23 residues within 4Å: Chain A: P.131, F.132, S.141, D.162, G.164, S.165, G.166, V.170, V.186, E.187, K.188, P.192, G.222, D.223, F.224, F.240, V.241, N.242, F.246, V.268, S.269, Y.313 Ligands: UNX.7 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.240, A:F.246, A:Y.313 Hydrogen bonds: A:S.141, A:D.162, A:D.162, A:G.166, A:K.188, A:D.223, A:F.224, A:N.242 Water bridges: A:G.168, A:N.242

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: V.20, H.118 No protein-ligand interaction detected (PLIP) UNX.3: 1 residues within 4Å: Chain A: Y.184 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain A: K.255, I.288 No protein-ligand interaction detected (PLIP) UNX.5: 5 residues within 4Å: Chain A: T.105, L.108, A.146, I.149, Q.173 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: P.103, S.104, L.107, K.212 No protein-ligand interaction detected (PLIP) UNX.7: 5 residues within 4Å: Chain A: F.132, S.133, S.141, N.242 Ligands: AW0.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, W. et al., Catalytic site remodelling of the DOT1L methyltransferase by selective inhibitors. Nat Commun (2012)

Release Date

2012-05-02

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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