SMTL ID : 4er0.1

Crystal Structure of human DOT1L in complex with inhibitor FED1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x AW1: 5'-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5'-deoxyadenosine(Non-covalent)

AW1.1: 23 residues within 4Å: Chain A: L.144, M.148, D.162, G.164, S.165, G.166, Q.169, V.170, E.187, K.188, A.189, P.192, G.222, D.223, F.224, F.240, V.241, N.242, F.246, V.268, S.269, S.270 Ligands: UNX.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.144, A:V.170, A:F.240, A:F.246, A:V.268 Hydrogen bonds: A:D.162, A:D.162, A:K.188, A:A.189, A:D.223, A:D.223, A:F.224, A:N.242 pi-Stacking: A:F.224

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: S.104, L.107, K.212 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: V.250 Ligands: AW1.1 No protein-ligand interaction detected (PLIP) UNX.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, W. et al., Catalytic site remodelling of the DOT1L methyltransferase by selective inhibitors. Nat Commun (2012)

Release Date

2012-05-02

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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