SMTL ID : 4er5.1

Crystal structure of human DOT1L in complex with 2 molecules of EPZ004777

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

monomer

Ligands

2 x 0QK: 7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine(Non-covalent)

0QK.1: 22 residues within 4Å: Chain A: Y.129, L.144, D.162, G.164, S.165, G.166, V.170, V.186, E.187, K.188, A.189, P.192, G.222, D.223, F.224, F.240, V.241, N.242, F.246, V.268, S.269, S.270 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.129, A:L.144, A:V.170, A:K.188, A:F.224, A:F.240, A:N.242, A:F.246, A:V.268 Hydrogen bonds: A:D.162, A:D.162, A:G.166, A:K.188, A:D.223, A:D.223, A:F.224 Water bridges: A:G.168, A:N.242 0QK.2: 16 residues within 4Å: Chain A: L.112, Q.113, Y.116, P.123, E.124, L.126, N.127, N.128, Y.129, P.134, Y.137, G.138, S.141, F.142, Q.169 Ligands: UNX.4 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.112, A:L.112, A:Y.116, A:Y.116, A:L.126, A:P.134, A:Y.137, A:F.142, A:Q.169 Hydrogen bonds: A:E.124, A:L.126, A:N.128, A:Q.169

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: R.43, W.44 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: N.128, Y.129 Ligands: 0QK.2 No protein-ligand interaction detected (PLIP) UNX.5: 1 residues within 4Å: Chain A: Y.184 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: S.104, L.107, K.212 No protein-ligand interaction detected (PLIP) UNX.7: 3 residues within 4Å: Chain A: L.8, R.9, C.76 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, W. et al., Catalytic site remodelling of the DOT1L methyltransferase by selective inhibitors. Nat Commun (2012)

Release Date

2012-05-16

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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