SMTL ID : 4er6.1

Crystal structure of human DOT1L in complex with inhibitor SGC0946

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x BR: BROMIDE ION(Non-covalent)

BR.1: 2 residues within 4Å: Chain A: L.225 Ligands: AW2.2 Ligand excluded by PLIP

1 x AW2: 5-bromo-7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine(Non-covalent)

AW2.2: 24 residues within 4Å: Chain A: M.148, D.162, L.163, G.164, S.165, G.166, V.170, E.187, K.188, A.189, P.192, G.222, D.223, F.224, L.225, F.240, V.241, N.242, F.246, V.268, S.269, S.270, Y.313 Ligands: BR.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.170, A:K.188, A:F.240, A:F.240, A:F.246, A:Y.313 Hydrogen bonds: A:D.162, A:D.162, A:K.188, A:A.189, A:D.223, A:D.223, A:F.224, A:N.242 Water bridges: A:V.170, A:N.242, A:N.242 pi-Stacking: A:F.224

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: K.53, L.54, M.56, N.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.58, A:N.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, W. et al., Catalytic site remodelling of the DOT1L methyltransferase by selective inhibitors. Nat Commun (2012)

Release Date

2012-05-16

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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