SMTL ID : 4er7.1

Crystal Structure of human DOT1L in complex with inhibitor SGC0947

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x AW3: 5-bromo-7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine(Non-covalent)

AW3.1: 20 residues within 4Å: Chain A: L.144, M.148, D.162, G.164, S.165, G.166, V.170, V.186, E.187, K.188, A.189, G.222, D.223, F.224, F.240, V.241, N.242, V.268, S.269, S.270 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.144, A:V.170, A:K.188, A:F.224, A:F.240, A:N.242, A:V.268 Hydrogen bonds: A:D.162, A:D.162, A:G.164, A:G.166, A:K.188, A:D.223, A:D.223, A:F.224, A:N.242 Water bridges: A:N.242

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: P.18, A.19, V.20, Y.21, H.118, K.205, W.206 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.18, A:V.20, A:H.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, W. et al., Catalytic site remodelling of the DOT1L methyltransferase by selective inhibitors. Nat Commun (2012)

Release Date

2012-05-16

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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