SMTL ID : 4erv.2 (1 other biounit)

Crystal structure of human ryanodine receptor 3 (2597-2800)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: W.154, K.158, E.161 Chain B: K.157 Ligands: GOL.6 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Water bridges: B:K.157, B:K.157, B:K.157, A:K.158, A:K.158 Salt bridges: B:K.157, A:K.158 Hydrogen bonds: A:W.154 SO4.2: 3 residues within 4Å: Chain A: A.181, K.184, R.188 4 PLIP interactions: 4 interactions with chain A Water bridges: A:A.181, A:K.184 Salt bridges: A:K.184, A:R.188 SO4.3: 4 residues within 4Å: Chain A: W.36, K.40 Chain B: K.186 Ligands: GOL.4 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Salt bridges: B:K.186, A:K.40 Water bridges: A:K.40, A:K.40 SO4.7: 5 residues within 4Å: Chain A: K.157 Chain B: W.154, K.158, E.161 Ligands: GOL.12 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:W.154 Water bridges: B:K.158, B:K.158, A:K.157, A:K.157, A:K.157 Salt bridges: B:K.158, A:K.157 SO4.8: 3 residues within 4Å: Chain B: A.181, K.184, R.188 4 PLIP interactions: 4 interactions with chain B Water bridges: B:A.181, B:K.184 Salt bridges: B:K.184, B:R.188 SO4.9: 4 residues within 4Å: Chain A: K.186 Chain B: W.36, K.40 Ligands: GOL.10 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Water bridges: B:K.40, B:K.40 Salt bridges: B:K.40, A:K.186

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: K.40, W.45, L.51, H.58 Chain B: A.182, F.185 Ligands: SO4.3 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:A.182, A:K.40, A:K.40 GOL.5: 7 residues within 4Å: Chain A: P.171, V.174, T.178, T.180, E.183 Chain B: K.70, I.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.178, A:T.180, A:E.183 GOL.6: 2 residues within 4Å: Chain A: W.154 Ligands: SO4.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.170, A:D.187 GOL.10: 7 residues within 4Å: Chain A: A.182, F.185 Chain B: K.40, W.45, L.51, H.58 Ligands: SO4.9 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.40, B:K.40, A:A.182 GOL.11: 7 residues within 4Å: Chain A: K.70, I.74 Chain B: P.171, V.174, T.178, T.180, E.183 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.178, B:T.178, B:T.180, B:E.183 GOL.12: 2 residues within 4Å: Chain B: W.154 Ligands: SO4.7 2 PLIP interactions: 2 interactions with chain B Water bridges: B:H.170, B:D.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuchi, Z. et al., Disease mutations in the ryanodine receptor central region: crystal structures of a phosphorylation hot spot domain. Structure (2012)

Release Date

2012-06-13

Peptides

Ryanodine receptor 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ryanodine receptor 3

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