SMTL ID : 4esb.1

Crystal structure of PadR-like transcriptional regulator (BC4206) from Bacillus cereus strain ATCC 14579

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Y.24, R.71, K.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.72 Water bridges: A:G.25, A:G.25, A:R.71 Salt bridges: A:R.71 SO4.6: 3 residues within 4Å: Chain B: Y.24, R.71, K.72 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.72 Water bridges: B:G.25, B:G.25, B:R.71 Salt bridges: B:R.71

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: E.21, E.22, K.63, A.64, Y.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.21, A:K.63 GOL.3: 2 residues within 4Å: Chain A: K.31, H.35 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.31 GOL.4: 6 residues within 4Å: Chain A: I.18, S.19, E.21, E.22, H.75, I.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.22, A:I.76 GOL.5: 6 residues within 4Å: Chain A: Y.24, S.65, S.66, L.67, R.71, Y.73 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.24, A:S.65, A:R.71, A:Y.73 GOL.7: 5 residues within 4Å: Chain B: E.21, E.22, K.63, A.64, Y.73 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.21, B:E.21, B:K.63 GOL.8: 2 residues within 4Å: Chain B: K.31, H.35 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.31 GOL.9: 6 residues within 4Å: Chain B: I.18, S.19, E.21, E.22, H.75, I.76 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.22, B:I.76 GOL.10: 6 residues within 4Å: Chain B: Y.24, S.65, S.66, L.67, R.71, Y.73 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.24, B:Y.24, B:S.65, B:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fibriansah, G. et al., Crystal Structures of Two Transcriptional Regulators from Bacillus cereus Define the Conserved Structural Features of a PadR Subfamily. Plos One (2012)

Release Date

2012-12-05

Peptides

Transcriptional regulator, PadR family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Transcriptional regulator, PadR family