SMTL ID : 4ese.1

The crystal structure of azoreductase from Yersinia pestis CO92 in complex with FMN.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

6 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 4 residues within 4Å: Chain A: P.184, E.185, V.186, K.189 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.186 Hydrogen bonds: A:V.186 Salt bridges: A:K.189 FMN.2: 12 residues within 4Å: Chain A: S.13, L.15, S.19, Q.20, S.21, P.98, M.99, Y.100, N.101, F.102, S.143 Chain B: L.54 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.100, B:L.54 Hydrogen bonds: A:S.13, A:Q.20, A:S.21, A:S.21, A:M.99, A:M.99, A:N.101, A:F.102, A:S.143, A:S.143 FMN.3: 6 residues within 4Å: Chain A: R.144, V.157, P.158, R.161, F.174, F.176 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.174, A:F.176 Hydrogen bonds: A:R.161 FMN.7: 4 residues within 4Å: Chain B: P.184, E.185, V.186, K.189 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.186 Hydrogen bonds: B:V.186 Salt bridges: B:K.189 FMN.8: 12 residues within 4Å: Chain A: L.54 Chain B: S.13, L.15, S.19, Q.20, S.21, P.98, M.99, Y.100, N.101, F.102, S.143 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.100, A:L.54 Hydrogen bonds: B:S.13, B:Q.20, B:S.21, B:S.21, B:M.99, B:M.99, B:Y.100, B:N.101, B:F.102, B:S.143, B:S.143 FMN.9: 6 residues within 4Å: Chain B: R.144, V.157, P.158, R.161, F.174, F.176 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.174, B:F.176 Hydrogen bonds: B:R.161

2 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)

12P.4: 6 residues within 4Å: Chain A: A.47, A.48 Chain B: E.57, T.70, R.72, Q.73 No protein-ligand interaction detected (PLIP) 12P.10: 6 residues within 4Å: Chain A: E.57, T.70, R.72, Q.73 Chain B: A.47, A.48 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.55

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: Q.23, F.27, E.185, V.186, A.187, T.188, K.189, A.190, Q.191 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.185, A:T.188, A:T.188, A:K.189, A:A.190, A:Q.191 GOL.11: 9 residues within 4Å: Chain B: Q.23, F.27, E.185, V.186, A.187, T.188, K.189, A.190, Q.191 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.185, B:T.188, B:T.188, B:K.189, B:A.190, B:Q.191

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.6: 8 residues within 4Å: Chain A: N.103, L.155, Y.159 Chain B: F.102, N.103, L.155, Y.159 Ligands: IMD.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.102 IMD.12: 8 residues within 4Å: Chain A: F.102, N.103, L.155, Y.159 Chain B: N.103, L.155, Y.159 Ligands: IMD.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of acyl carrier protein phosphodiesterase from Yersinia pestis CO92 in complex with FMN. To be Published

Release Date

2012-05-23

Peptides

FMN-dependent NADH-azoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

FMN-dependent NADH-azoreductase

Related Entries With Identical Sequence