SMTL ID : 4esk.5 (6 other biounits)

Crystal structure of a strand-swapped dimer of Mouse Leukocyte-associated immunoglobulin-like receptor 1 (NYSGRC-006047)IG-like domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-tetramer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain B: M.52, K.54, E.64, F.65, E.66 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.54, B:E.66 GOL.4: 5 residues within 4Å: Chain C: F.25, M.52, E.66, I.67, G.68 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:E.66, C:E.66, C:G.68 Water bridges: C:E.66, C:E.66 GOL.5: 5 residues within 4Å: Chain D: M.52, E.66, I.67, G.68, I.74 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.68, D:G.68

1 x K: POTASSIUM ION(Non-covalent)

K.2: 6 residues within 4Å: Chain B: Y.32, E.57, K.60, T.61, E.62, D.63 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.57, B:K.60, B:E.62, B:D.63, B:D.63

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: D.34 Chain B: S.16, S.17, E.96 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.96, B:E.96 Water bridges: B:S.17 NA.6: 6 residues within 4Å: Chain D: Y.32, T.56, E.57, K.60, T.61, D.63 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.32, D:E.57, D:D.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sampathkumar, P. et al., Crystal structure of a strand-swapped dimer of Mouse Leukocyte-associated immunoglobulin-like receptor 1 IG-like domain. to be published

Release Date

2012-05-02

Peptides

Leukocyte-associated immunoglobulin-like receptor 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Leukocyte-associated immunoglobulin-like receptor 1

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