SMTL ID : 4eso.1

Crystal structure of a putative oxidoreductase protein from Sinorhizobium meliloti 1021 in complex with NADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 31 residues within 4Å: Chain A: G.15, G.16, T.17, H.18, G.19, M.20, G.39, R.40, N.41, N.44, S.61, D.62, I.63, N.89, A.90, G.91, V.92, V.112, T.137, S.138, S.139, Y.152, K.156, P.182, G.183, F.184, I.185, T.187, T.189, K.190, G.191 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:P.182 Hydrogen bonds: A:T.17, A:T.17, A:H.18, A:H.18, A:R.40, A:R.40, A:N.41, A:N.44, A:D.62, A:D.62, A:I.63, A:N.89, A:G.91, A:Y.152, A:K.156, A:I.185, A:I.185, A:T.189, A:G.191 Water bridges: A:H.18, A:H.18, A:N.89, A:G.91, A:V.92 Salt bridges: A:H.18, A:H.18 NAP.2: 32 residues within 4Å: Chain B: G.15, G.16, T.17, H.18, G.19, M.20, G.39, R.40, N.41, N.44, S.61, D.62, I.63, N.89, A.90, G.91, V.92, V.112, T.137, S.138, S.139, Y.152, K.156, P.182, G.183, F.184, I.185, T.187, T.189, K.190, G.191 Ligands: GOL.3 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:P.182 Hydrogen bonds: B:G.15, B:T.17, B:H.18, B:R.40, B:N.41, B:N.44, B:D.62, B:I.63, B:N.89, B:G.91, B:K.156, B:I.185, B:I.185, B:T.187, B:T.189 Water bridges: B:G.91, B:G.191 Salt bridges: B:H.18, B:H.18 NAP.4: 26 residues within 4Å: Chain C: G.15, T.17, H.18, M.20, G.39, R.40, N.41, N.44, S.61, D.62, I.63, N.89, A.90, G.91, V.92, V.112, T.137, S.138, S.139, Y.152, K.156, G.183, F.184, I.185, R.200 Ligands: GOL.5 20 PLIP interactions: 20 interactions with chain C Hydrogen bonds: C:T.17, C:T.17, C:T.17, C:H.18, C:R.40, C:R.40, C:N.41, C:N.44, C:D.62, C:D.62, C:I.63, C:N.89, C:G.91, C:Y.152, C:K.156, C:I.185, C:I.185 Salt bridges: C:H.18, C:R.40, C:R.200 NAP.6: 26 residues within 4Å: Chain D: G.15, T.17, H.18, G.19, M.20, G.39, R.40, N.41, N.44, S.61, D.62, I.63, N.89, A.90, G.91, V.92, T.137, S.138, S.139, Y.152, K.156, P.182, G.183, F.184, I.185, T.187 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:P.182 Hydrogen bonds: D:H.18, D:H.18, D:R.40, D:N.41, D:N.44, D:D.62, D:I.63, D:N.89, D:N.89, D:G.91, D:K.156, D:I.185

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain B: S.139, V.140, M.149, F.184, K.190, F.203 Ligands: NAP.2 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.139, B:S.139, B:K.190 GOL.5: 3 residues within 4Å: Chain C: G.91, S.93 Ligands: NAP.4 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A. et al., Crystal structure of a putative oxidoreductase protein from Sinorhizobium meliloti 1021 in complex with NADP. To be Published

Release Date

2012-05-16

Peptides

Putative oxidoreductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative oxidoreductase