SMTL ID : 4esp.1

Crystal Structure of Peanut Allergen Ara h 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: K.70, Y.71, M.72, K.85, K.86 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.70 Water bridges: A:K.86 EDO.2: 5 residues within 4Å: Chain A: T.80, K.95, T.96, N.97, I.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.97 Water bridges: A:T.80 EDO.3: 4 residues within 4Å: Chain A: Q.27, K.95, T.96, N.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.27, A:K.95, A:N.97 Water bridges: A:K.95 EDO.4: 2 residues within 4Å: Chain A: S.30, V.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.31, A:V.31 EDO.5: 10 residues within 4Å: Chain A: D.52, F.53, P.56, G.76, E.77, P.78, G.79, V.81, I.82 Ligands: EDO.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.52, A:G.76, A:E.77, A:G.79 Water bridges: A:G.76, A:E.77 EDO.6: 6 residues within 4Å: Chain A: P.56, G.57, I.74, Q.75, G.76 Ligands: EDO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.57, A:G.76 Water bridges: A:D.52, A:G.57 EDO.7: 3 residues within 4Å: Chain A: V.31, Q.40, F.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.41, A:F.41 EDO.8: 1 residues within 4Å: Chain A: W.2 No protein-ligand interaction detected (PLIP)

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.9: 3 residues within 4Å: Chain A: D.28, S.30, W.32 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.30 IPA.10: 4 residues within 4Å: Chain A: W.2, L.10, I.24, A.33 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.2, A:L.10, A:I.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Crystal Structure of Peanut ( Arachis hypogaea ) Allergen Ara h 5. J.Agric.Food Chem. (2013)

Release Date

2013-03-06

Peptides

Profilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Profilin