SMTL ID : 4etm.1

Crystal structure of YfkJ from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: C.25, L.26, G.27, N.28, I.29, C.30, R.31, D.142, Y.144 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.26, A:G.27, A:N.28, A:I.29, A:C.30, A:R.31 Salt bridges: A:R.31 PO4.4: 9 residues within 4Å: Chain B: C.25, L.26, G.27, N.28, I.29, C.30, R.31, D.142, Y.144 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:L.26, B:G.27, B:N.28, B:I.29, B:C.30, B:R.31, B:D.142 Salt bridges: B:R.31

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: L.96, D.97, F.99, H.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.96 NA.5: 4 residues within 4Å: Chain B: L.96, D.97, F.99, H.124 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.99

2 x K: POTASSIUM ION(Non-covalent)

K.3: 3 residues within 4Å: Chain A: N.28, S.56, L.87 No protein-ligand interaction detected (PLIP) K.6: 4 residues within 4Å: Chain B: N.28, S.56, L.87, R.89 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, X.F. et al., Crystal structure of YfkJ from Bacillus subtilis. To be published

Release Date

2012-10-24

Peptides

Low molecular weight protein-tyrosine-phosphatase yfkJ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Low molecular weight protein-tyrosine-phosphatase yfkJ