SMTL ID : 4ety.5 (6 other biounits)

Crystal structure of a strand-swapped dimer of Mouse Leukocyte-associated immunoglobulin-like receptor 1 (NYSGRC-006047) Extra Cellular Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: N.15, L.18, L.95 Chain C: T.11, I.12 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:N.15, C:I.12, C:N.15 EDO.2: 8 residues within 4Å: Chain A: E.45, D.47, G.48, H.77, Y.78, S.79, R.91, T.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.45, A:G.48, A:T.94, A:T.94 EDO.3: 6 residues within 4Å: Chain B: T.11, I.12, N.15 Chain D: N.15, L.18 Ligands: EDO.4 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:N.15, B:I.12, B:I.12 Water bridges: D:K.93 EDO.4: 6 residues within 4Å: Chain B: N.15, L.95 Chain D: T.11, I.12, N.15 Ligands: EDO.3 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:N.15, D:I.12, D:I.12 Water bridges: B:K.93 EDO.5: 9 residues within 4Å: Chain B: E.45, K.46, D.47, G.48, H.77, Y.78, S.79, R.91, T.94 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.45, B:G.48, B:R.91, B:T.94 EDO.6: 8 residues within 4Å: Chain A: S.6, L.7, P.8, D.9 Chain B: K.93 Chain C: S.31, Y.32, S.33 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.33, A:S.6 EDO.7: 8 residues within 4Å: Chain A: P.8, D.9 Chain B: S.92, K.93 Chain C: S.92, K.93 Chain D: P.8, D.9 6 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 2 interactions with chain D, 1 interactions with chain B Hydrogen bonds: A:P.8, A:D.9, C:K.93, D:P.8, D:D.9, B:K.93 EDO.8: 2 residues within 4Å: Chain D: M.52, E.53 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.53 EDO.9: 6 residues within 4Å: Chain D: N.40, M.41, R.43, S.83, K.84, G.85 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.40, D:R.43, D:S.83, D:G.85 EDO.10: 2 residues within 4Å: Chain D: K.54, S.55 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sampathkumar, P. et al., Crystal structure of a strand-swapped dimer of Mouse Leukocyte-associated immunoglobulin-like receptor 1 Extra Cellular Domain. to be published

Release Date

2012-06-06

Peptides

Leukocyte-associated immunoglobulin-like receptor 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Leukocyte-associated immunoglobulin-like receptor 1

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