SMTL ID : 4eut.1

Structure of BX-795 Complexed with Unphosphorylated Human TBK1 Kinase-ULD Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x BX7: N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide(Non-covalent)

BX7.1: 19 residues within 4Å: Chain A: L.17, G.18, Q.19, G.20, A.23, V.25, A.38, M.88, E.89, F.90, C.91, P.92, C.93, G.94, G.141, M.144, T.158, D.159 Ligands: IOD.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.17 Hydrogen bonds: A:C.91, A:C.91, A:P.92 BX7.3: 20 residues within 4Å: Chain B: L.17, G.18, Q.19, G.20, A.23, V.25, A.38, K.40, M.88, E.89, C.91, P.92, C.93, G.94, T.98, G.141, M.144, T.158, D.159 Ligands: IOD.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.17, B:L.17 Hydrogen bonds: B:C.91, B:C.91, B:P.92

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: T.158, D.159 Ligands: BX7.1 Ligand excluded by PLIP IOD.4: 5 residues within 4Å: Chain B: V.25, K.40, T.158, D.159 Ligands: BX7.3 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: R.56, R.136, R.164 Chain B: R.164, R.189 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.56, A:R.136, A:R.164, B:R.164, B:R.189 SO4.6: 6 residues within 4Å: Chain A: R.164, R.189, Q.197 Chain B: R.56, R.136, R.164 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Salt bridges: B:R.56, B:R.136, B:R.164, A:R.164, A:R.189 Hydrogen bonds: A:Q.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, X. et al., Molecular basis of Tank-binding kinase 1 activation by transautophosphorylation. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-05-23

Peptides

Serine/threonine-protein kinase TBK1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase TBK1