SMTL ID : 4ew7.1

The crystal structure of conjugative transfer PAS_like domain from Salmonella enterica subsp. enterica serovar Typhimurium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 9 residues within 4Å: Chain A: C.91, R.93, Q.102 Chain B: C.91, R.93, Q.102 Ligands: CL.5, SIN.7, CL.11 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.102, A:Q.102 Water bridges: B:R.92, B:R.93, A:C.91, A:R.93 Salt bridges: B:R.93, A:R.93 SIN.7: 9 residues within 4Å: Chain A: C.91, R.93, Q.102 Chain B: C.91, R.93, Q.102 Ligands: SIN.1, CL.5, CL.11 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.102, A:Q.102 Water bridges: B:C.91, B:R.93, A:R.92, A:R.93 Salt bridges: B:R.93, A:R.93

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 5 residues within 4Å: Chain A: L.77, E.80, F.90, R.92 Chain B: P.125 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:P.125, A:E.80, A:F.90 Salt bridges: A:R.92 ACY.8: 5 residues within 4Å: Chain A: P.125 Chain B: L.77, E.80, F.90, R.92 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:E.80, B:F.90, A:P.125 Salt bridges: B:R.92

2 x PYR: PYRUVIC ACID(Non-covalent)

PYR.3: 5 residues within 4Å: Chain A: G.87, A.89 Chain B: P.30, N.122, L.123 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.87, A:A.89, B:L.123 Hydrophobic interactions: B:L.123 PYR.9: 5 residues within 4Å: Chain A: P.30, N.122, L.123 Chain B: G.87, A.89 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.87, B:A.89, A:L.123 Hydrophobic interactions: A:L.123

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: S.83, L.84, G.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.83 Water bridges: A:G.85 NA.10: 3 residues within 4Å: Chain B: S.83, L.84, G.85 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.84 Water bridges: B:G.85

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: R.92, R.93 Ligands: SIN.1, SIN.7 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: R.92, R.93 Ligands: SIN.1, SIN.7 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 1 residues within 4Å: Chain A: N.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.95 GOL.12: 1 residues within 4Å: Chain B: N.95 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, R. et al., The crystal structure of conjugative transfer PAS_like domain from Salmonella enterica subsp. enterica serovar Typhimurium. To be Published

Release Date

2012-09-12

Peptides

Conjugative transfer: regulation: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Conjugative transfer: regulation