SMTL ID : 4ex5.1

Crystal structure of lysyl-tRNA synthetase LysRS from Burkholderia thailandensis bound to lysine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x LYS: LYSINE(Non-covalent)

LYS.1: 13 residues within 4Å: Chain A: G.237, A.238, A.259, E.261, R.283, E.299, Y.301, N.449, F.451, E.453, G.498, C.499, G.500 10 PLIP interactions: 9 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.451 Hydrogen bonds: A:G.237, A:G.237, A:Y.301, A:N.449, A:E.453, K.1 Water bridges: A:R.283, A:R.283 Salt bridges: A:R.283 LYS.2: 13 residues within 4Å: Chain B: G.237, A.238, A.259, E.261, R.283, E.299, Y.301, N.449, F.451, E.453, G.498, C.499, G.500 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:F.451 Hydrogen bonds: B:G.237, B:Y.301, B:N.449, B:N.449 Salt bridges: B:R.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moen, S.O. et al., Ligand co-crystallization of aminoacyl-tRNA synthetases from infectious disease organisms. Sci Rep (2017)

Release Date

2012-05-09

Peptides

Lysine--tRNA ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine--tRNA ligase