SMTL ID : 4exh.1 (1 other biounit)

The crystal structure of xmrv protease complexed with acetyl-pepstatin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ACE- VAL- VAL- STA- ALA: ACETYL-PEPSTATIN(Non-covalent)

ACE-VAL-VAL-STA-ALA.1: 15 residues within 4Å: Chain A: D.39, A.64, P.96 Chain B: G.41, A.42, Q.43, A.59, W.60, V.61, Q.62, G.63, A.64, L.90, L.99 Ligands: ACE-VAL-VAL-STA-ALA.2 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.64, B:Q.43, B:W.60 Hydrophobic interactions: B:A.59, B:L.90 ACE-VAL-VAL-STA-ALA.2: 13 residues within 4Å: Chain A: D.39, G.41, A.42, Q.43, H.44, W.60, V.61, Q.62, G.63, W.72, L.99 Ligands: ACE-VAL-VAL-STA-ALA.1, FMT.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:A.64, A:Q.43, A:Q.43 Hydrophobic interactions: V.0, A:W.72

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 3 residues within 4Å: Chain A: W.60 Ligands: ACE-VAL-VAL-STA-ALA.2, ACE-VAL-VAL-STA-ALA.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matuz, K. et al., Inhibition of XMRV and HIV-1 proteases by pepstatin A and acetyl-pepstatin. Febs J. (2012)

Release Date

2012-08-01

Peptides

Putative gag-pro-pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative gag-pro-pol polyprotein

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