SMTL ID : 4exn.1 (1 other biounit)

Crystal structure of mouse Interleukin-34

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- BMA- MAN: beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-MAN.1: 8 residues within 4Å: Chain A: Y.48, E.49, V.51, N.56, R.59, V.125, S.135, K.137 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.134 Hydrogen bonds: A:E.49, A:K.137

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 5 residues within 4Å: Chain A: L.76, N.80, L.126, L.129, S.130 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.130 NAG-NAG-BMA.4: 4 residues within 4Å: Chain B: L.76, N.80, L.129, S.130 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.130, B:S.130

1 x NAG- NAG- BMA- MAN- BMA: alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-BMA.3: 8 residues within 4Å: Chain B: Y.48, E.49, V.51, L.52, N.56, R.59, V.125, K.137 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.135 Hydrogen bonds: B:E.49, B:K.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., The mechanism of shared but distinct CSF-1R signaling by the non-homologous cytokines IL-34 and CSF-1. Biochim.Biophys.Acta (2012)

Release Date

2012-05-30

Peptides

Interleukin-34: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Interleukin-34

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