SMTL ID : 4exp.1

Structure of mouse Interleukin-34 in complex with mouse FMS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: Y.48, E.49, G.50, V.51, N.56, R.59, V.125 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.49, A:E.49, A:G.50, A:R.59 Water bridges: A:R.59 NAG.2: 4 residues within 4Å: Chain A: N.80, L.129, S.130 Chain B: G.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.80, A:S.130 NAG.3: 6 residues within 4Å: Chain B: A.1, D.2, N.29, G.30, E.70, E.72 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.2, B:N.29, B:E.70 NAG.4: 2 residues within 4Å: Chain B: N.57, T.59 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.57 Hydrogen bonds: B:T.59 NAG.5: 7 residues within 4Å: Chain C: Y.48, E.49, G.50, V.51, N.56, R.59, V.125 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.49, C:G.50, C:R.59 Water bridges: C:R.59 NAG.6: 4 residues within 4Å: Chain C: N.80, L.129, S.130 Chain D: G.128 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.80, C:S.130 NAG.7: 6 residues within 4Å: Chain D: A.1, D.2, N.29, G.30, E.70, E.72 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.2, D:N.29, D:E.70 NAG.8: 2 residues within 4Å: Chain D: N.57, T.59 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:N.57 Hydrogen bonds: D:T.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., The mechanism of shared but distinct CSF-1R signaling by the non-homologous cytokines IL-34 and CSF-1. Biochim.Biophys.Acta (2012)

Release Date

2012-05-30

Peptides

Interleukin-34: AC
Macrophage colony-stimulating factor 1 receptor: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
X

D
X

Interleukin-34

Macrophage colony-stimulating factor 1 receptor