SMTL ID : 4ey2.1 (2 other biounits)

Crystal structure of NDM-1 bound to hydrolyzed methicillin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.17 Å

Oligo State

monomer

Ligands

1 x 0RM: (2R,4S)-2-{(R)-carboxy[(2,6-dimethoxybenzoyl)amino]methyl}-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Non-covalent)

0RM.1: 16 residues within 4Å: Chain A: L.65, M.67, W.93, H.122, Q.123, D.124, E.152, H.189, C.208, K.211, L.218, G.219, N.220, H.250 Ligands: ZN.2, ZN.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Q.123, A:N.220 Hydrogen bonds: A:Q.123, A:D.124, A:N.220, A:N.220 Water bridges: A:H.122 Salt bridges: A:H.122, A:H.189, A:H.189, A:K.211, A:H.250

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: D.124, C.208, H.250 Ligands: 0RM.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.124, A:C.208, A:H.250, H2O.9 ZN.3: 4 residues within 4Å: Chain A: H.120, H.122, H.189 Ligands: 0RM.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.120, A:H.122, A:H.189, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, D.T. et al., New Delhi Metallo-Beta-Lactamase: Structural Insights into Beta-Lactam Recognition and Inhibition. J.Am.Chem.Soc. (2012)

Release Date

2012-08-08

Peptides

Beta-lactamase NDM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase NDM-1

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