SMTL ID : 4ey6.1

Crystal Structure of Recombinant Human Acetylcholinesterase in Complex with (-)-galantamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain A: A.342, P.343, G.344, F.345, S.346, N.349 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.346, A:G.344 NAG-NAG-FUC.2: 6 residues within 4Å: Chain B: P.343, G.344, F.345, S.346, D.348, N.349 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:D.348 Hydrogen bonds: B:S.346, B:G.344

2 x GNT: (-)-GALANTHAMINE(Non-covalent)

GNT.3: 14 residues within 4Å: Chain A: D.73, W.85, G.119, G.120, G.121, Y.123, S.124, E.201, S.202, F.294, F.296, Y.336, F.337, H.446 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.85, A:W.85, A:W.85, A:Y.123, A:F.296, A:Y.336, A:F.337 Hydrogen bonds: A:S.202, A:Y.336 Water bridges: A:G.119, A:G.121, A:S.124, A:Y.132, A:A.203 GNT.7: 12 residues within 4Å: Chain B: W.85, G.119, G.120, G.121, Y.123, E.201, S.202, F.294, F.296, Y.336, F.337, H.446 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:W.85, B:W.85, B:W.85, B:Y.123, B:F.296, B:F.337 Hydrogen bonds: B:S.202, B:Y.336 Water bridges: B:G.119, B:G.121, B:S.124, B:Y.132, B:A.203

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 8 residues within 4Å: Chain A: Y.381, T.382, D.383, H.386, P.387, R.392, L.393, A.396 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.383, A:P.387, A:R.392 EDO.5: 5 residues within 4Å: Chain A: Q.507, A.525, C.528, A.529, R.533 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.507, A:C.528, A:R.533 Water bridges: A:Q.507, A:N.532, A:N.532 EDO.8: 8 residues within 4Å: Chain B: Y.381, T.382, D.383, H.386, P.387, R.392, L.393, A.396 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.381, B:D.383, B:H.386

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain B: N.264 No protein-ligand interaction detected (PLIP)

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.9: 4 residues within 4Å: Chain B: P.161, M.240, G.241, R.244 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.161, B:R.244 NO3.10: 5 residues within 4Å: Chain A: W.384 Chain B: Q.507, A.525, A.529, R.533 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.507, B:A.525, B:R.533

1 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-covalent)

PE8.11: 7 residues within 4Å: Chain B: G.162, M.240, D.303, G.304, D.305, S.308, D.309 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheung, J. et al., Structures of human acetylcholinesterase in complex with pharmacologically important ligands. J.Med.Chem. (2012)

Release Date

2012-10-17

Peptides

Acetylcholinesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acetylcholinesterase

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