SMTL ID : 4f0a.1

Crystal structure of XWnt8 in complex with the cysteine-rich domain of Frizzled 8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.22 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 6 residues within 4Å: Chain B: S.21, V.24, T.78, N.82, D.87, F.88 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.24

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.3: 6 residues within 4Å: Chain B: E.232, D.233, K.240, N.241, S.243, L.244 No protein-ligand interaction detected (PLIP)

1 x PAM: PALMITOLEIC ACID(Covalent)

PAM.4: 9 residues within 4Å: Chain A: Q.44, F.45, P.47, I.51, M.95, Y.98, F.100, P.103 Chain B: S.165 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.47, A:I.51, A:F.100

3 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain B: L.51, H.54, H.68, E.130, N.140 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.54, B:H.68, B:E.130, B:E.130 ZN.6: 2 residues within 4Å: Chain B: E.282, H.313 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.282, B:H.313 ZN.7: 1 residues within 4Å: Chain B: H.186 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Janda, C.Y. et al., Structural basis of Wnt recognition by Frizzled. Science (2012)

Release Date

2012-06-13

Peptides

Frizzled-8: A
Protein Wnt-8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Frizzled-8

Protein Wnt-8

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