SMTL ID : 4f0m.1

UNACTIVATED RUBISCO with MAGNESIUM AND A WATER MOLECULE BOUND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-8-8-mer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: H.300, H.302, Q.409 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain C: H.300, H.302, Q.409 No protein-ligand interaction detected (PLIP) MG.11: 3 residues within 4Å: Chain E: H.300, H.302, Q.409 No protein-ligand interaction detected (PLIP) MG.16: 3 residues within 4Å: Chain G: H.300, H.302, Q.409 No protein-ligand interaction detected (PLIP) MG.21: 3 residues within 4Å: Chain I: H.300, H.302, Q.409 No protein-ligand interaction detected (PLIP) MG.26: 3 residues within 4Å: Chain K: H.300, H.302, Q.409 No protein-ligand interaction detected (PLIP) MG.31: 3 residues within 4Å: Chain M: H.300, H.302, Q.409 No protein-ligand interaction detected (PLIP) MG.36: 3 residues within 4Å: Chain O: H.300, H.302, Q.409 No protein-ligand interaction detected (PLIP)

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: Q.312, K.313, N.314, H.315 Chain K: Q.312, N.314, H.315 Ligands: GOL.27 Ligand excluded by PLIP GOL.4: 6 residues within 4Å: Chain A: E.169, R.170 Chain B: R.44, S.46 Chain E: L.228, F.229 Ligand excluded by PLIP GOL.5: 9 residues within 4Å: Chain A: A.239, A.240 Chain B: M.1, P.107, G.108, F.109, Y.128 Chain H: P.133, E.134 Ligand excluded by PLIP GOL.7: 8 residues within 4Å: Chain C: Q.312, K.313, N.314, H.315 Chain I: Q.312, N.314, H.315 Ligands: GOL.22 Ligand excluded by PLIP GOL.9: 6 residues within 4Å: Chain C: E.169, R.170 Chain D: R.44, S.46 Chain G: L.228, F.229 Ligand excluded by PLIP GOL.10: 9 residues within 4Å: Chain C: A.239, A.240 Chain D: M.1, P.107, G.108, F.109, Y.128 Chain F: P.133, E.134 Ligand excluded by PLIP GOL.12: 8 residues within 4Å: Chain E: Q.312, K.313, N.314, H.315 Chain M: Q.312, N.314, H.315 Ligands: GOL.32 Ligand excluded by PLIP GOL.14: 6 residues within 4Å: Chain C: L.228, F.229 Chain E: E.169, R.170 Chain F: R.44, S.46 Ligand excluded by PLIP GOL.15: 9 residues within 4Å: Chain B: P.133, E.134 Chain E: A.239, A.240 Chain F: M.1, P.107, G.108, F.109, Y.128 Ligand excluded by PLIP GOL.17: 8 residues within 4Å: Chain G: Q.312, K.313, N.314, H.315 Chain O: Q.312, N.314, H.315 Ligands: GOL.37 Ligand excluded by PLIP GOL.19: 6 residues within 4Å: Chain A: L.228, F.229 Chain G: E.169, R.170 Chain H: R.44, S.46 Ligand excluded by PLIP GOL.20: 9 residues within 4Å: Chain D: P.133, E.134 Chain G: A.239, A.240 Chain H: M.1, P.107, G.108, F.109, Y.128 Ligand excluded by PLIP GOL.22: 8 residues within 4Å: Chain C: Q.312, N.314, H.315 Chain I: Q.312, K.313, N.314, H.315 Ligands: GOL.7 Ligand excluded by PLIP GOL.24: 6 residues within 4Å: Chain I: E.169, R.170 Chain J: R.44, S.46 Chain M: L.228, F.229 Ligand excluded by PLIP GOL.25: 9 residues within 4Å: Chain I: A.239, A.240 Chain J: M.1, P.107, G.108, F.109, Y.128 Chain P: P.133, E.134 Ligand excluded by PLIP GOL.27: 8 residues within 4Å: Chain A: Q.312, N.314, H.315 Chain K: Q.312, K.313, N.314, H.315 Ligands: GOL.2 Ligand excluded by PLIP GOL.29: 6 residues within 4Å: Chain K: E.169, R.170 Chain L: R.44, S.46 Chain O: L.228, F.229 Ligand excluded by PLIP GOL.30: 9 residues within 4Å: Chain K: A.239, A.240 Chain L: M.1, P.107, G.108, F.109, Y.128 Chain N: P.133, E.134 Ligand excluded by PLIP GOL.32: 8 residues within 4Å: Chain E: Q.312, N.314, H.315 Chain M: Q.312, K.313, N.314, H.315 Ligands: GOL.12 Ligand excluded by PLIP GOL.34: 6 residues within 4Å: Chain K: L.228, F.229 Chain M: E.169, R.170 Chain N: R.44, S.46 Ligand excluded by PLIP GOL.35: 9 residues within 4Å: Chain J: P.133, E.134 Chain M: A.239, A.240 Chain N: M.1, P.107, G.108, F.109, Y.128 Ligand excluded by PLIP GOL.37: 8 residues within 4Å: Chain G: Q.312, N.314, H.315 Chain O: Q.312, K.313, N.314, H.315 Ligands: GOL.17 Ligand excluded by PLIP GOL.39: 6 residues within 4Å: Chain I: L.228, F.229 Chain O: E.169, R.170 Chain P: R.44, S.46 Ligand excluded by PLIP GOL.40: 9 residues within 4Å: Chain L: P.133, E.134 Chain O: A.239, A.240 Chain P: M.1, P.107, G.108, F.109, Y.128 Ligand excluded by PLIP

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain B: Q.114 Chain D: Q.114 Chain F: Q.114 Chain H: Q.114 Ligands: CL.8, CL.13, CL.18 Ligand excluded by PLIP CL.8: 7 residues within 4Å: Chain B: Q.114 Chain D: Q.114 Chain F: Q.114 Chain H: Q.114 Ligands: CL.3, CL.13, CL.18 Ligand excluded by PLIP CL.13: 7 residues within 4Å: Chain B: Q.114 Chain D: Q.114 Chain F: Q.114 Chain H: Q.114 Ligands: CL.3, CL.8, CL.18 Ligand excluded by PLIP CL.18: 7 residues within 4Å: Chain B: Q.114 Chain D: Q.114 Chain F: Q.114 Chain H: Q.114 Ligands: CL.3, CL.8, CL.13 Ligand excluded by PLIP CL.23: 7 residues within 4Å: Chain J: Q.114 Chain L: Q.114 Chain N: Q.114 Chain P: Q.114 Ligands: CL.28, CL.33, CL.38 Ligand excluded by PLIP CL.28: 7 residues within 4Å: Chain J: Q.114 Chain L: Q.114 Chain N: Q.114 Chain P: Q.114 Ligands: CL.23, CL.33, CL.38 Ligand excluded by PLIP CL.33: 7 residues within 4Å: Chain J: Q.114 Chain L: Q.114 Chain N: Q.114 Chain P: Q.114 Ligands: CL.23, CL.28, CL.38 Ligand excluded by PLIP CL.38: 7 residues within 4Å: Chain J: Q.114 Chain L: Q.114 Chain N: Q.114 Chain P: Q.114 Ligands: CL.23, CL.28, CL.33 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stec, B., Structural mechanism of RuBisCO activation by carbamylation of the active site lysine. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-11-14

Peptides

Ribulose bisphosphate carboxylase large chain: ACEGIKMO
Ribulose bisphosphate carboxylase small chain: BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

M
A

O
A

B
B

D
B

F
B

H
B

J
B

L
B

N
B

P
B

Ribulose bisphosphate carboxylase large chain

Ribulose bisphosphate carboxylase small chain

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