SMTL ID : 4f2a.1

Crystal structure of cholestryl esters transfer protein in complex with inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- FUC: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-FUC.1: 8 residues within 4Å: Chain A: N.396, L.397, T.398, E.399, S.401, S.402, E.403, Q.406 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.402, A:E.403

2 x 2OB: CHOLESTERYL OLEATE(Non-covalent)

2OB.2: 18 residues within 4Å: Chain A: I.15, L.20, L.23, I.82, V.84, T.138, S.191, M.194, V.198, L.228, L.261, F.263, F.441, M.459, F.461, F.463 Ligands: PGE.5, 0SF.7 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.15, A:I.15, A:L.20, A:L.23, A:I.82, A:V.84, A:T.138, A:M.194, A:V.198, A:V.198, A:L.228, A:F.263, A:F.441, A:F.461 2OB.3: 29 residues within 4Å: Chain A: F.270, L.287, V.295, L.296, V.323, V.338, V.340, V.346, I.367, T.369, V.371, A.373, Y.375, L.382, M.412, I.413, V.416, G.417, I.418, V.421, M.422, L.425, F.429, M.433, V.438, I.448, L.455, L.457 Ligands: PCW.4 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.270, A:L.287, A:V.295, A:L.296, A:V.323, A:V.323, A:V.340, A:I.367, A:V.371, A:Y.375, A:Y.375, A:V.416, A:V.421, A:L.425, A:L.425, A:F.429, A:F.429, A:V.438, A:I.448, A:I.448, A:L.455

1 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PCW.4: 27 residues within 4Å: Chain A: L.206, S.207, D.208, I.211, F.236, F.265, V.269, F.270, L.273, A.274, A.277, R.282, L.283, M.284, L.285, V.323, C.325, I.331, V.340, V.344, V.421, R.424, L.425, V.428, F.429, L.432 Ligands: 2OB.3 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.206, A:D.208, A:I.211, A:F.236, A:F.236, A:F.265, A:V.269, A:F.270, A:F.270, A:L.273, A:L.273, A:L.285, A:V.323, A:I.331, A:V.344, A:R.424, A:L.425, A:F.429, A:L.432

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 5 residues within 4Å: Chain A: L.23, T.27, M.194, L.468 Ligands: 2OB.2 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: Y.99, R.158, P.160 Ligand excluded by PLIP

1 x 0SF: (2R)-3-{[4-(4-chloro-3-ethylphenoxy)pyrimidin-2-yl][3-(1,1,2,2-tetrafluoroethoxy)benzyl]amino}-1,1,1-trifluoropropan-2-ol(Non-covalent)

0SF.7: 19 residues within 4Å: Chain A: I.11, C.13, I.15, L.129, V.136, V.198, Q.199, R.201, A.202, I.205, L.206, I.215, L.228, S.230, H.232, L.261, F.263, F.441 Ligands: 2OB.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.11, A:V.198, A:Q.199, A:A.202, A:I.205, A:L.206, A:I.215, A:I.215 Hydrogen bonds: A:S.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Crystal structures of cholesteryl ester transfer protein in complex with inhibitors. J.Biol.Chem. (2012)

Release Date

2012-09-05

Peptides

Cholesteryl ester transfer protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholesteryl ester transfer protein

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