SMTL ID : 4f2v.1

Crystal Structure of de novo designed serine hydrolase, Northeast Structural Genomics Consortium (NESG) Target OR165

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

homo-dimer

Ligands

2 x LMU: DODECYL-ALPHA-D-MALTOSIDE(Non-covalent)

LMU.1: 23 residues within 4Å: Chain A: R.21, L.58, L.59, F.62, L.80, W.83, V.93, W.98, N.143, A.144, P.145, S.146, H.147, F.150, R.166, S.167, S.173, F.176, S.180, G.181, L.184 Chain B: R.126 Ligands: PEG.2 22 PLIP interactions: 21 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.58, A:L.59, A:F.62, A:L.80, A:W.98, A:F.150, A:F.176, A:L.184 Hydrogen bonds: A:R.21, A:R.21, A:A.144, A:A.144, A:S.167, A:S.167, A:D.169, A:S.173, A:S.173, B:R.126 Water bridges: A:R.166, A:Y.209 Salt bridges: A:H.147, A:R.166 LMU.3: 17 residues within 4Å: Chain A: R.126 Chain B: F.62, I.79, L.80, W.83, N.143, A.144, P.145, S.146, F.150, R.166, S.167, D.169, S.173, A.177, S.180, L.184 19 PLIP interactions: 18 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.62, B:I.79, B:L.80, B:F.150, B:L.184 Hydrogen bonds: B:A.144, B:A.144, B:S.146, B:S.146, B:R.166, B:S.167, B:S.167, B:D.169, B:S.173, B:S.173, A:R.126 Water bridges: B:Y.209 Salt bridges: B:H.147, B:R.166

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 9 residues within 4Å: Chain A: F.62, V.93, H.94, W.98, A.132, P.145, S.146, H.147 Ligands: LMU.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.98, A:S.146, A:S.146, A:H.147, A:H.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajagopalan, S. et al., Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat.Chem.Biol. (2014)

Release Date

2012-05-30

Peptides

De novo designed serine hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

De novo designed serine hydrolase