SMTL ID : 4f32.1

Crystal structure of 3-oxoacyl-[acyl-carrier-protein] synthase II from Burkholderia vietnamiensis in complex with platencin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x UNK- UNK- UNK: Unknown peptide(Non-covalent)

UNK-UNK-UNK.1: 4 residues within 4Å: Chain A: I.150, R.158, L.159, S.160 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.150 Hydrogen bonds: A:R.158, A:S.160

2 x N32: 2,4-DIHYDROXY-3-({3-[(2S,4AS,8S,8AR)-8-METHYL-3-METHYLIDENE-7-OXO-1,3,4,7,8,8A-HEXAHYDRO-2H-2,4A-ETHANONAPHTHALEN-8-YL]PROPANOYL}AMINO)BENZOIC ACID(Non-covalent)

N32.2: 19 residues within 4Å: Chain A: C.193, A.235, R.236, A.237, F.260, H.299, T.301, A.302, G.303, H.334, T.336, T.338, P.339, V.340, G.341, H.370, F.428, G.429, F.430 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.302, A:V.340 Hydrogen bonds: A:T.301, A:T.301, A:G.303, A:T.336, A:T.338, A:V.340, A:G.341, A:F.428 Water bridges: A:A.302 Salt bridges: A:H.334, A:H.370 pi-Stacking: A:F.430 N32.4: 19 residues within 4Å: Chain B: C.193, A.235, R.236, A.237, F.260, H.299, T.301, A.302, G.303, H.334, T.336, T.338, P.339, V.340, G.341, H.370, F.428, G.429, F.430 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.302, B:V.340 Hydrogen bonds: B:T.301, B:T.301, B:G.303, B:V.340, B:G.341, B:F.428 Water bridges: B:A.302 Salt bridges: B:H.334, B:H.370 pi-Stacking: B:F.430

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: E.211 Chain B: G.201, M.204, R.205, Y.291, M.320 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.211, B:G.201 EDO.5: 5 residues within 4Å: Chain A: M.204, R.205, R.208, M.320 Chain B: E.211 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.211, A:R.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-05-23

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] synthase 2

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