SMTL ID : 4f3y.1

X-Ray Crystal Structure of Dihydrodipicolinate reductase from Burkholderia thailandensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: V.27, L.28, A.30, A.33 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.33 NA.8: 4 residues within 4Å: Chain B: I.179, A.180, T.183, R.185 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.183, B:R.185, B:R.185 NA.9: 4 residues within 4Å: Chain B: V.27, L.28, A.30, A.33 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.28 NA.16: 4 residues within 4Å: Chain C: V.27, L.28, A.30, A.33 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:V.27 NA.23: 4 residues within 4Å: Chain D: I.179, A.180, T.183, R.185 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:I.179, D:T.183, D:R.185 NA.24: 4 residues within 4Å: Chain D: V.27, L.28, A.30, A.33 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:V.27

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.195, R.202 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain B: G.14, L.39, D.40, R.41, H.89 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain C: R.195, R.202 Ligand excluded by PLIP CL.25: 5 residues within 4Å: Chain D: G.14, L.39, D.40, R.41, H.89 Ligand excluded by PLIP

20 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 5 residues within 4Å: Chain A: D.259 Ligands: UNX.4, UNX.5, UNX.6, UNX.7 Ligand excluded by PLIP UNX.4: 4 residues within 4Å: Chain A: K.121, D.259 Ligands: UNX.3, UNX.5 Ligand excluded by PLIP UNX.5: 6 residues within 4Å: Chain A: D.97, K.121, D.259 Ligands: UNX.3, UNX.4, UNX.6 Ligand excluded by PLIP UNX.6: 5 residues within 4Å: Chain A: D.97, D.259 Ligands: UNX.3, UNX.5, UNX.7 Ligand excluded by PLIP UNX.7: 3 residues within 4Å: Chain A: D.259 Ligands: UNX.3, UNX.6 Ligand excluded by PLIP UNX.11: 6 residues within 4Å: Chain B: K.121, D.259, A.260 Ligands: UNX.12, UNX.14, UNX.15 Ligand excluded by PLIP UNX.12: 7 residues within 4Å: Chain B: D.97, K.121, I.122, D.259 Ligands: UNX.11, UNX.13, UNX.15 Ligand excluded by PLIP UNX.13: 5 residues within 4Å: Chain B: D.97, D.259 Ligands: UNX.12, UNX.14, UNX.15 Ligand excluded by PLIP UNX.14: 4 residues within 4Å: Chain B: D.259 Ligands: UNX.11, UNX.13, UNX.15 Ligand excluded by PLIP UNX.15: 5 residues within 4Å: Chain B: D.259 Ligands: UNX.11, UNX.12, UNX.13, UNX.14 Ligand excluded by PLIP UNX.18: 5 residues within 4Å: Chain C: D.259 Ligands: UNX.19, UNX.20, UNX.21, UNX.22 Ligand excluded by PLIP UNX.19: 4 residues within 4Å: Chain C: K.121, D.259 Ligands: UNX.18, UNX.20 Ligand excluded by PLIP UNX.20: 6 residues within 4Å: Chain C: D.97, K.121, D.259 Ligands: UNX.18, UNX.19, UNX.21 Ligand excluded by PLIP UNX.21: 5 residues within 4Å: Chain C: D.97, D.259 Ligands: UNX.18, UNX.20, UNX.22 Ligand excluded by PLIP UNX.22: 3 residues within 4Å: Chain C: D.259 Ligands: UNX.18, UNX.21 Ligand excluded by PLIP UNX.26: 6 residues within 4Å: Chain D: K.121, D.259, A.260 Ligands: UNX.27, UNX.29, UNX.30 Ligand excluded by PLIP UNX.27: 7 residues within 4Å: Chain D: D.97, K.121, I.122, D.259 Ligands: UNX.26, UNX.28, UNX.30 Ligand excluded by PLIP UNX.28: 5 residues within 4Å: Chain D: D.97, D.259 Ligands: UNX.27, UNX.29, UNX.30 Ligand excluded by PLIP UNX.29: 4 residues within 4Å: Chain D: D.259 Ligands: UNX.26, UNX.28, UNX.30 Ligand excluded by PLIP UNX.30: 5 residues within 4Å: Chain D: D.259 Ligands: UNX.26, UNX.27, UNX.28, UNX.29 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-06-06

Peptides

Dihydrodipicolinate reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Dihydrodipicolinate reductase