SMTL ID : 4f4d.1

F337R variant of human ferrochelatase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: Y.59, S.66, I.68, H.277, I.278 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: Y.59, S.66, I.68, H.277, I.278 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: P.213, Q.214, S.217, W.237, L.247 Chain B: P.213, Q.214, S.217, W.237 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:S.217, A:S.217, A:S.217 Water bridges: B:W.237, B:W.237, A:Q.214, A:W.237

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.3: 6 residues within 4Å: Chain A: C.132, R.208, S.338, C.339, C.342, C.347 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.132, A:C.339, A:C.342, A:C.347 FES.8: 6 residues within 4Å: Chain B: C.132, R.208, S.338, C.339, C.342, C.347 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.132, B:C.339, B:C.342, B:C.347

6 x CHD: CHOLIC ACID(Non-covalent)

CHD.4: 13 residues within 4Å: Chain A: M.12, L.25, L.28, L.34, R.51, K.54, I.55, Q.58, T.134, H.199, V.241, R.273 Ligands: CHD.5 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:M.12, A:L.25, A:L.34, A:V.241, A:V.241 Hydrogen bonds: A:Q.58, A:R.273 Water bridges: A:H.199, A:H.277 Salt bridges: A:R.51, A:K.54 CHD.5: 8 residues within 4Å: Chain A: M.35, I.47, R.50, R.51, M.244, W.246 Ligands: CHD.4, CHD.6 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:M.35, A:I.47, A:R.51, A:W.246 Salt bridges: A:R.50, A:R.51 CHD.6: 6 residues within 4Å: Chain A: T.36, P.38, L.43, I.47, R.50 Ligands: CHD.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.43, A:L.43, A:I.47 Water bridges: A:T.36 CHD.9: 10 residues within 4Å: Chain B: M.35, I.47, R.50, R.51, P.202, V.241, M.244, W.246 Ligands: CHD.10, CHD.11 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:M.35, B:R.51, B:P.202, B:V.241, B:W.246 Salt bridges: B:R.50 CHD.10: 6 residues within 4Å: Chain B: T.36, L.37, P.38, L.43, I.47 Ligands: CHD.9 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.37, B:P.38, B:L.43 CHD.11: 11 residues within 4Å: Chain B: L.25, L.28, L.34, R.51, K.54, I.55, T.134, H.199, V.241, W.246 Ligands: CHD.9 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.25, B:L.28, B:L.28, B:L.34, B:I.55, B:V.241, B:V.241 Hydrogen bonds: B:H.199 Water bridges: B:H.199 Salt bridges: B:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lanzilotta, W.N. et al., F337R Variant of Human Ferrochelatase. TO BE PUBLISHED

Release Date

2012-09-12

Peptides

Ferrochelatase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ferrochelatase, mitochondrial