SMTL ID : 4f4q.1

Crystal structure of M. smegmatis DprE1 in complex with FAD and covalently bound BTZ043

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

monomer

Ligands

1 x 0SK: 8-(hydroxyamino)-2-[(2S)-2-methyl-1,4-dioxa-8-azaspiro[4.5]dec-8-yl]-6-(trifluoromethyl)-4H-1,3-benzothiazin-4-one(Covalent)

0SK.1: 14 residues within 4Å: Chain A: G.124, H.139, G.140, K.141, S.235, Q.343, L.370, V.372, K.374, F.376, N.392, C.394, K.425 Ligands: FAD.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.370, A:V.372 Hydrogen bonds: A:K.425 Water bridges: A:Q.343, A:Q.343, A:K.425 Halogen bonds: A:N.392

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 34 residues within 4Å: Chain A: W.24, I.59, A.60, R.61, G.62, L.63, G.64, R.65, S.66, Y.67, N.70, A.71, M.81, A.101, P.123, G.124, T.125, V.128, T.129, G.131, G.132, G.135, C.136, I.138, H.139, N.185, G.186, G.189, I.190, I.191, Y.422, A.424, K.425 Ligands: 0SK.1 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:W.24, A:Y.67, A:T.125 Hydrogen bonds: A:G.62, A:L.63, A:G.64, A:R.65, A:S.66, A:S.66, A:N.70, A:G.124, A:T.129, A:T.129, A:H.139, A:H.139, A:N.185, A:I.191, A:I.191, A:Y.422, A:K.425 Water bridges: A:G.64, A:G.131, A:G.131, A:Q.343 pi-Cation interactions: A:K.425

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neres, J. et al., Structural Basis for Benzothiazinone-Mediated Killing of Mycobacterium tuberculosis. Sci Transl Med (2012)

Release Date

2012-09-05

Peptides

DprE1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DprE1

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