SMTL ID : 4f4r.2 (1 other biounit)

Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: D.234, H.236, E.260, D.261, E.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.260 Water bridges: A:Y.182 NA.5: 5 residues within 4Å: Chain B: D.234, H.236, E.260, D.261, E.286 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.261, B:E.286 Water bridges: B:D.234, B:E.286

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 9 residues within 4Å: Chain A: G.102, P.103, V.104, T.105 Chain B: G.102, P.103, V.104, T.105 Ligands: CL.6 Ligand excluded by PLIP CL.6: 9 residues within 4Å: Chain A: G.102, P.103, V.104, T.105 Chain B: G.102, P.103, V.104, T.105 Ligands: CL.2 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: N.60, P.194, H.336, P.338, D.340, L.413 Chain B: Y.98, W.99 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.60, A:H.336 Water bridges: A:T.339, A:T.339 GOL.4: 6 residues within 4Å: Chain A: H.364, D.372, H.377, Y.379, F.381, F.386 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.364, A:D.372, A:H.377 Water bridges: A:F.381 GOL.7: 8 residues within 4Å: Chain A: Y.98, W.99 Chain B: N.60, P.194, H.336, P.338, D.340, L.413 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.60, B:H.336 Water bridges: B:T.339, B:T.339 GOL.8: 6 residues within 4Å: Chain B: H.364, D.372, H.377, Y.379, F.381, F.386 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.364, B:D.372, B:H.377 Water bridges: B:D.372, B:F.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop. to be published

Release Date

2012-06-27

Peptides

D-mannonate dehydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

D-mannonate dehydratase

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