SMTL ID : 4f5l.1

A Theoretical Optimized Mutant for the Conversion of Substrate Specificity and Activity of Aspartate Aminotransferase to Tyrosine Aminotransferase: Chimera P7.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: G.85, R.86, Q.89, R.106, T.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.89, A:T.107 Water bridges: A:D.79 EDO.2: 6 residues within 4Å: Chain A: L.92, Q.225, S.252, S.253, C.254, N.257 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.225, A:N.257, A:N.257 EDO.3: 6 residues within 4Å: Chain A: G.230, L.231, E.318, L.321, T.322, R.325 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.231, A:T.322, A:R.325, A:R.325 EDO.4: 6 residues within 4Å: Chain A: R.118, D.122, S.149, A.150 Chain B: R.118, D.122 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.118, A:D.122, B:R.118, B:D.122 Water bridges: B:K.126 EDO.5: 1 residues within 4Å: Chain A: D.170 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.170 EDO.6: 7 residues within 4Å: Chain A: V.9, G.10, T.11 Chain B: G.215, W.216, L.217, E.247 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.11 Water bridges: A:V.9, A:V.9, B:W.216, B:E.247 EDO.7: 7 residues within 4Å: Chain A: G.44, W.140, N.193, Y.224, K.256, F.358, R.384 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.193, A:N.193, A:R.384 Water bridges: A:W.140, B:Y.75 EDO.8: 7 residues within 4Å: Chain B: P.82, G.85, R.86, Q.89, R.106, T.107 Ligands: EDO.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.82, B:Q.89, B:T.107 EDO.9: 5 residues within 4Å: Chain B: L.92, Q.225, S.253, C.254, N.257 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.225, B:N.257, B:N.257 EDO.10: 1 residues within 4Å: Chain B: D.170 No protein-ligand interaction detected (PLIP) EDO.11: 6 residues within 4Å: Chain B: Y.75, L.76, G.77, L.78, S.294, S.295 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.77 Water bridges: B:Y.75, B:L.78, B:S.294, B:S.295 EDO.12: 7 residues within 4Å: Chain B: Q.89, I.100, K.103, R.104, A.105, R.106 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.105, B:R.106 EDO.13: 2 residues within 4Å: Chain B: E.163, N.164 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Addington, T.A. et al., Janus: an algorithm for ranking functional importance of residues from protein sequence alignments. To be Published

Release Date

2013-05-15

Peptides

Aspartate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartate aminotransferase