SMTL ID : 4f87.1

X-ray Crystal Structure of PlyCB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-octamer

Ligands

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 3 residues within 4Å: Chain B: H.20, T.21, S.26 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.26 Water bridges: B:T.21, B:Y.29 MRD.3: 3 residues within 4Å: Chain F: H.20, T.21, S.26 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:S.26 Water bridges: F:T.21, F:Y.29

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain D: G.28, Y.29, K.41, D.42, I.43 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:Y.29 Hydrogen bonds: D:K.41 Water bridges: D:Y.29, D:I.43 MPD.4: 5 residues within 4Å: Chain H: G.28, Y.29, K.41, D.42, I.43 4 PLIP interactions: 4 interactions with chain H Hydrophobic interactions: H:Y.29 Hydrogen bonds: H:K.41 Water bridges: H:Y.29, H:I.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGowan, S. et al., X-ray crystal structure of the streptococcal specific phage lysin PlyC. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-07-25

Peptides

PlyCB: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

PlyCB

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