- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-10-mer
- Ligands
- 8 x GD1: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one(Covalent)(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain B: D.163, R.165
- Chain J: R.165
- Ligands: MG.20
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.163, H2O.2, H2O.2, H2O.12
MG.5: 4 residues within 4Å:- Chain C: D.163, R.165
- Chain I: R.165
- Ligands: MG.17
5 PLIP interactions:1 interactions with chain C, 1 interactions with chain I, 3 Ligand-Water interactions- Metal complexes: C:D.163, I:R.165, H2O.3, H2O.3, H2O.11
MG.7: 4 residues within 4Å:- Chain D: D.163, R.165
- Chain H: R.165
- Ligands: MG.15
5 PLIP interactions:1 interactions with chain D, 1 interactions with chain H, 3 Ligand-Water interactions- Metal complexes: D:D.163, H:R.165, H2O.5, H2O.5, H2O.5
MG.10: 4 residues within 4Å:- Chain E: D.163, R.165
- Chain G: R.165
- Ligands: MG.12
5 PLIP interactions:1 interactions with chain G, 1 interactions with chain E, 3 Ligand-Water interactions- Metal complexes: G:R.165, E:D.163, H2O.6, H2O.6, H2O.6
MG.12: 4 residues within 4Å:- Chain E: R.165
- Chain G: D.163, R.165
- Ligands: MG.10
4 PLIP interactions:1 interactions with chain G, 3 Ligand-Water interactions- Metal complexes: G:D.163, H2O.6, H2O.8, H2O.8
MG.15: 4 residues within 4Å:- Chain D: R.165
- Chain H: D.163, R.165
- Ligands: MG.7
5 PLIP interactions:1 interactions with chain H, 1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: H:D.163, D:R.165, H2O.5, H2O.10, H2O.10
MG.17: 4 residues within 4Å:- Chain C: R.165
- Chain I: D.163, R.165
- Ligands: MG.5
5 PLIP interactions:1 interactions with chain C, 1 interactions with chain I, 3 Ligand-Water interactions- Metal complexes: C:R.165, I:D.163, H2O.11, H2O.11, H2O.11
MG.20: 4 residues within 4Å:- Chain B: R.165
- Chain J: D.163, R.165
- Ligands: MG.2
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain J, 3 Ligand-Water interactions- Metal complexes: B:R.165, J:D.163, H2O.12, H2O.12, H2O.12
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)
PE4.8: 13 residues within 4Å:- Chain B: Y.150, N.154, Y.158
- Chain C: Y.150, N.154, Y.158
- Chain D: Y.150, N.154, L.157, Y.158
- Chain E: Y.150, N.154, Y.158
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:Y.150, D:Y.150
PE4.18: 13 residues within 4Å:- Chain G: Y.150, N.154, Y.158
- Chain H: Y.150, N.154, Y.158
- Chain I: Y.150, N.154, L.157, Y.158
- Chain J: Y.150, N.154, Y.158
2 PLIP interactions:1 interactions with chain I, 1 interactions with chain J- Hydrogen bonds: I:Y.150, J:Y.150
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chikwana, V.M. et al., Structural basis of biological nitrile reduction. J.Biol.Chem. (2012)
- Release Date
- 2012-07-11
- Peptides
- NADPH-dependent 7-cyano-7-deazaguanine reductase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-10-mer
- Ligands
- 8 x GD1: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one(Covalent)(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chikwana, V.M. et al., Structural basis of biological nitrile reduction. J.Biol.Chem. (2012)
- Release Date
- 2012-07-11
- Peptides
- NADPH-dependent 7-cyano-7-deazaguanine reductase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E