SMTL ID : 4f8e.1

Crystal structure of human PRS1 D52H mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-hexamer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: A.223, D.224, T.225, C.226, G.227, T.228 Ligand excluded by PLIP SO4.2: 7 residues within 4Å: Chain A: E.307, S.308, V.309, S.310 Chain B: R.104 Chain E: S.47, R.49 Ligand excluded by PLIP SO4.3: 8 residues within 4Å: Chain A: S.132, Q.135, N.144, Y.146 Chain B: K.99, K.100, D.101, K.102 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain B: A.223, D.224, T.225, C.226, G.227, T.228 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain A: R.104 Chain B: E.307, S.308, V.309, S.310 Chain D: S.47, R.49 Ligand excluded by PLIP SO4.7: 7 residues within 4Å: Chain A: K.100, D.101, K.102 Chain B: S.132, Q.135, N.144, Y.146 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain C: A.223, D.224, T.225, C.226, G.227, T.228 Ligand excluded by PLIP SO4.10: 7 residues within 4Å: Chain A: S.47, R.49 Chain C: E.307, S.308, V.309, S.310 Chain D: R.104 Ligand excluded by PLIP SO4.11: 8 residues within 4Å: Chain C: S.132, Q.135, N.144, Y.146 Chain D: K.99, K.100, D.101, K.102 Ligand excluded by PLIP SO4.13: 6 residues within 4Å: Chain D: A.223, D.224, T.225, C.226, G.227, T.228 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain C: R.104 Chain D: E.307, S.308, V.309, S.310 Chain F: S.47, R.49 Ligand excluded by PLIP SO4.15: 7 residues within 4Å: Chain C: K.100, D.101, K.102 Chain D: S.132, Q.135, N.144, Y.146 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain E: A.223, D.224, T.225, C.226, G.227, T.228 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain C: S.47, R.49 Chain E: E.307, S.308, V.309, S.310 Chain F: R.104 Ligand excluded by PLIP SO4.19: 8 residues within 4Å: Chain E: S.132, Q.135, N.144, Y.146 Chain F: K.99, K.100, D.101, K.102 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain F: A.223, D.224, T.225, C.226, G.227, T.228 Ligand excluded by PLIP SO4.22: 7 residues within 4Å: Chain B: S.47, R.49 Chain E: R.104 Chain F: E.307, S.308, V.309, S.310 Ligand excluded by PLIP SO4.23: 7 residues within 4Å: Chain E: K.100, D.101, K.102 Chain F: S.132, Q.135, N.144, Y.146 Ligand excluded by PLIP

6 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain A: H.52, Y.54, H.304 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain B: H.52, Y.54, R.84 No protein-ligand interaction detected (PLIP) MG.12: 3 residues within 4Å: Chain C: H.52, Y.54, H.304 No protein-ligand interaction detected (PLIP) MG.16: 3 residues within 4Å: Chain D: H.52, Y.54, R.84 No protein-ligand interaction detected (PLIP) MG.20: 3 residues within 4Å: Chain E: H.52, Y.54, H.304 No protein-ligand interaction detected (PLIP) MG.24: 3 residues within 4Å: Chain F: H.52, Y.54, R.84 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, P. et al., A small disturbance, but a serious disease: the possible mechanism of D52H-mutant of human PRS1 that causes gout. Iubmb Life (2013)

Release Date

2013-05-22

Peptides

Ribose-phosphate pyrophosphokinase 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Ribose-phosphate pyrophosphokinase 1