SMTL ID : 4f99.1

Human CDC7 kinase in complex with DBF4 and nucleotide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: I.29, G.30, E.31, G.32, S.35, V.37, A.53, K.55, M.83, M.99, P.100, Y.101, L.102, H.104, S.146, N.147, L.149, D.161 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.35, A:P.100, A:L.102 Water bridges: A:H.104, A:S.146, A:S.146, A:S.146 Salt bridges: A:K.55, A:K.55

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.147, D.161 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.161, H2O.1, H2O.1

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: C.90, C.93, H.103, H.109 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.90, B:C.93, B:H.103, B:H.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hughes, S. et al., Crystal structure of human CDC7 kinase in complex with its activator DBF4. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-10-31

Peptides

Cell division cycle 7-related protein kinase: A
Protein DBF4 homolog A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cell division cycle 7-related protein kinase

Protein DBF4 homolog A

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